BioMicro

Aziz, R. K., Bartels, D., Best, A. A., DeJongh, M., Disz, T., Edwards, R. A., Formsma, K., et al. (2008). The RAST Server: Rapid Annotations using Subsystems Technology. BMC Genomics, 9(1), 75. BioMed Central. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/18261238

Cerdeira, L. T., Carneiro, A. R., Ramos, R. T. J., de Almeida, S. S., D Afonseca, V., Schneider, M. P. C., Baumbach, J., et al. (2011). Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study. Journal of microbiological methods, 86(2), 218-223. Elsevier B.V. doi:10.1016/j.mimet.2011.05.008

Chaisson, M. J., Brinza, D., & Pevzner, P. A. (2009). De novo fragment assembly with short mate-paired reads: Does the read length matter? Genome Research, 19(2), 336-346. Cold Spring Harbor Lab. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/19056694

Delcher, A. L., Bratke, K. A., Powers, E. C., & Salzberg, S. L. (2007). Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics, 23(6), 673-679. Oxford Univ Press. doi:10.1093/bioinformatics/btm009

Hernandez, D., François, P., Farinelli, L., Osterås, M., & Schrenzel, J. (2008). De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer. Genome research, 18(5), 802-9. doi:10.1101/gr.072033.107

Kumar, P., Chaitanya, P. S., & Nagarajaram, H. a. (2011). PSSRdb: a relational database of polymorphic simple sequence repeats extracted from prokaryotic genomes. Nucleic acids research, 39(Database issue), D601-5. doi:10.1093/nar/gkq1198

Kurtz, S., Phillippy, A., Delcher, A. L., Smoot, M., Shumway, M., Antonescu, C., & Salzberg, S. L. (2004). Versatile and open software for comparing large genomes. Genome Biology, 5(2), R12. BioMed Central. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=395750&tool=pmcentrez&rendertype=abstract

Lagesen, K., Hallin, P., Rødland, E. A., Stærfeldt, H.-H., Rognes, T., & Ussery, D. W. (2007). RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Research, 35(9), 3100-3108. Oxford University Press. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1888812&tool=pmcentrez&rendertype=abstract

Lesk, A.M. (2008). Introduction to bioinformatics, 3rd ed. Oxford University Press, ISBN 0199208042, 9780199208043, 474 pp.
Lowe, T. M., & Eddy, S. R. (1997). tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Research, 25(5), 955-964. Oxford Univ Press. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=146525&tool=pmcentrez&rendertype=abstract

Tsai, I. J., Otto, T. D., & Berriman, M. (2010). Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps. Genome biology, 11(4), R41. doi:10.1186/gb-2010-11-4-r41

Apoio:





		Aziz, R. K., Bartels, D., Best, A. A., DeJongh, M., Disz, T., Edwards, R. A., Formsma, K., et al. (2008). The RAST Server: Rapid Annotations using Subsystems Technology. BMC Genomics, 9(1), 75. BioMed Central. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/18261238 Cerdeira, L. T., Carneiro, A. R., Ramos, R. T. J., de Almeida, S. S., D Afonseca, V., Schneider, M. P. C., Baumbach, J., et al. (2011). Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study. Journal of microbiological methods, 86(2), 218-223. Elsevier B.V. doi:10.1016/j.mimet.2011.05.008 Chaisson, M. J., Brinza, D., & Pevzner, P. A. (2009). De novo fragment assembly with short mate-paired reads: Does the read length matter? Genome Research, 19(2), 336-346. Cold Spring Harbor Lab. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/19056694 Delcher, A. L., Bratke, K. A., Powers, E. C., & Salzberg, S. L. (2007). Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics, 23(6), 673-679. Oxford Univ Press. doi:10.1093/bioinformatics/btm009 Hernandez, D., François, P., Farinelli, L., Osterås, M., & Schrenzel, J. (2008). De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer. Genome research, 18(5), 802-9. doi:10.1101/gr.072033.107 Kumar, P., Chaitanya, P. S., & Nagarajaram, H. a. (2011). PSSRdb: a relational database of polymorphic simple sequence repeats extracted from prokaryotic genomes. Nucleic acids research, 39(Database issue), D601-5. doi:10.1093/nar/gkq1198 Kurtz, S., Phillippy, A., Delcher, A. L., Smoot, M., Shumway, M., Antonescu, C., & Salzberg, S. L. (2004). Versatile and open software for comparing large genomes. Genome Biology, 5(2), R12. BioMed Central. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=395750&tool=pmcentrez&rendertype=abstract Lagesen, K., Hallin, P., Rødland, E. A., Stærfeldt, H.-H., Rognes, T., & Ussery, D. W. (2007). RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Research, 35(9), 3100-3108. Oxford University Press. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1888812&tool=pmcentrez&rendertype=abstract Lesk, A.M. (2008). Introduction to bioinformatics, 3rd ed. Oxford University Press, ISBN 0199208042, 9780199208043, 474 pp. Lowe, T. M., & Eddy, S. R. (1997). tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Research, 25(5), 955-964. Oxford Univ Press. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=146525&tool=pmcentrez&rendertype=abstract Tsai, I. J., Otto, T. D., & Berriman, M. (2010). Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps. Genome biology, 11(4), R41. doi:10.1186/gb-2010-11-4-r41 Apoio:
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